Tools
Software Tools
MiRNALasso
This adaptive lasso based tool integrates gene sequence features and expression profiles to predict functional miRNA-mRNA interactions.
[MATLAB code] (external link) [Paper] (external link)
CaMDesgin
This is a combinatorial analysis of Calmodulin (CaM) sequence evolution and its conformational dynamics. The framework can be used to study how a promiscuous protein has adapted to bind to a larger number of partner proteins.
[Database] (external link) [Paper] (external link)
mHealthApp
This is a centralized resource that provides the detailed information of more than 60,000 apps related to health in the Apple App Store and Google Play Store. This database allows the meta-analysis of health-related apps and provides guidance for research designs of future apps in the mHealth field.
[Datasets] (external link) [Paper] (external link)
TargetS
This Web server hosts a novel computational tool to predict miRNA targets with the target sites located along entire gene sequences, including both the coding sequences and untranslated regions.
[Web server] (external link) [Paper] (external link)
netVar
This tool implements a network-based method that uses the gene connectivity in the gene co-expression network as the evaluation criteria for variable selection.
[Source Code] (external link) [Paper] (external link)
pLasso
This software tool incorporates prior knowledge on both network structure and pathway information for the reconstruction of gene networks.
[Source Code] (external link) [Paper] (external link)
sdcPPI
This tool predicts protein-protein interactions based on estimated domain-domain interaction probabilities, by integrating large-scale protein interaction data from three model organisms. The tool is implemented in both C and Perl and can run on Linux or Windows OS.
[Download-Windows] (external link) [Download-Linux] (external link) [Paper] (external link)