Software Tools


This adaptive lasso based tool integrates gene sequence features and expression profiles to predict functional miRNA-mRNA interactions.

[MATLAB code] [Paper]



This is a combinatorial analysis of Calmodulin (CaM) sequence evolution and its conformational dynamics. The framework can be used to study how a promiscuous protein has adapted to bind to a larger number of partner proteins.

[Database] [Paper]



This is a centralized resource that provides the detailed information of more than 60,000 apps related to health in the Apple App Store and Google Play Store. This database allows the meta-analysis of health-related apps and provides guidance for research designs of future apps in the mHealth field.

[Datasets]  [Paper]



This Web server hosts a novel computational tool to predict miRNA targets with the target sites located along entire gene sequences, including both the coding sequences and untranslated regions.

[Web server]  [Paper]



This tool implements a network-based method that uses the gene connectivity in the gene co-expression network as the evaluation criteria for variable selection.

[Source Code]   [Paper]



This software tool incorporates prior knowledge on both network structure and pathway information for the reconstruction of gene networks.

[Source Code]  [Paper]



This tool predicts protein-protein interactions based on estimated domain-domain interaction probabilities, by integrating large-scale protein interaction data from three model organisms. The tool is implemented in both C and Perl and can run on Linux or Windows OS.

[Download-Windows]  [Download-Linux]   [Paper]


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